We present CoronaHiT, a platform and throughput flexible method for sequencing SARS-CoV-2 genomes (& #8804; 96 on MinION or> 96 on Illumina NextSeq) depending on changing requirements experienced during the pandemic . CoronaHiT uses transposase-based library preparation of ARTIC PCR products . Method performance was demonstrated by sequencing 2 plates containing 95 and 59 SARS-CoV-2 genomes on nanopore and Illumina platforms and comparing to the ARTIC LoCost nanopore method . Of the 154 samples sequenced using all 3 methods, & #8805; 90% genome coverage was obtained for 64.3% using ARTIC LoCost , 71.4% using CoronaHiT-ONT and 76.6% using CoronaHiT-Illumina, with almost identical clustering on a maximum likelihood tree . This protocol will aid the rapid expansion of SARS-CoV-2 genome sequencing globally.